Testing for lesser known antibodies produces a better COVID-19 test

Most antibody tests look for responses to SARS-CoV-2's spike protein, but more accurate results include antibodies against the virus's other proteins

Kialani Mackey


Occidental College

Before we can go back to a somewhat “normal” state, many scientists say we need widespread testing and contact tracing—but how effective is our current testing system? 

To determine if someone currently has COVID-19 we test for the presence of the virus. To determine if someone was previously infected, we test for the antibodies their body produced in response to the infection. These antibodies usually specifically target the COVID-19 spike protein—an appendage that helps the virus enter human cells. 

Many caution against the accuracy of COVID-19 tests as studies show a growing number of false negative results from infected individuals with milder symptoms. A paper published recently in Nature outlines that analyzing antibody responses to the lesser studied, nonstructural COVID-19 proteins—proteins of unknown function—answer this diagnostic problem.

These researchers measured levels of antibodies targeting various COVID-19 proteins in the blood of infected and uninfected individuals. Results showed that analyzing the combined antibody response to the presence of two specific nonstructural proteins, called ORF8 and ORF3b, produced results that were 73 percent more accurate than testing for all spike protein antibodies. 

ORF8 and ORF3b antibody levels were most constant across infected participants from 1 to over 30 days after the onset of symptoms. This suggests that, unlike the current spike protein antibody test, diagnostic tests looking at ORF8 and ORF3b antibodies are ideal for diagnosing individuals with current or past COVID-19 infections.  

COVID-19 testing previously ignored nonstructural SARS-CoV-2 protein antibodies. But now these have clear potential to replace current diagnostic targets. More accurate testing will allow for both the public and public health experts to better understand the spread of the virus so that they can work together to contain this destructive pandemic. 

Our experiences help us judge how well we will learn new things

New research disentangles the effects of experience and belief on metamemory

Daniel Ribeiro


University of Coimbra

Have you ever wondered if you would remember some information in the future? If so, you have made a judgment of learning (JOL). JOLs are part of our metamemory – our ability to reflect on our own memory. 

JOLs about how likely we will be to remember a certain word – for example, in the case of a student studying for a vocabulary test – depend on beliefs and knowledge we have about how word frequency impacts memory. They are also influenced by a subjective feeling of ease we might get from the word. And scientists have wondered, which is more important to JOLs: our beliefs about a word, or our experience with it? 

To clarify which factor better explains the effect of word frequency on JOLs, a group of scientists asked research study participants to make judgements of their personal learning before and after studying words. JOLs made before studying indicate the effects of the participants' beliefs only, but those made after indicate the effects of both their beliefs and their direct experience with the words.

 Previous research has shown that common words are more easily remembered than rare words. So, the scientists tricked participants and lead them to believe the opposite, by telling them that rare words on a list were common, and vice versa. They found that JOLs made after the participants encountered each word were consistently higher for common words, even when researchers had said the words were rare. This points to a person's experience as an important factor in their judgements of their learning.  

This line of research will help scientists understand how we make JOLs and to work on ways to improve people’s metamemories in different scenarios, such as learning new things.

Kids can tell if you're smiling under your mask

Study finds that a mask has the same impact as sunglasses on a child's ability to perceive the wearer's emotions

Jayati Sharma

Genetics and Epidemiology

Johns Hopkins University

Wallet, keys, phone, mask. Mask-wearing, a core and useful intervention to combat the raging pandemic, has become a daily habit for most people. It's also, however, raised concerns around kids' ability to understand emotions and social clues when surrounded by masked adults.

Psychologists at the University of Wisconsin-Madison explored this question of how well kids can identify anger, sadness, and fear among mask-wearers in a study of 81 US children aged seven to 13 years old published in PLoS ONE. Study participants made inferences about the emotions being conveyed in facial configurations of digital simulations of three types of faces: uncovered, wearing sunglasses, or wearing surgical masks.

Though children were best able to identify emotions in uncovered images 66 percent of the time, children were still able to successfully draw emotional inferences from facial configurations of mask wearers. This accuracy was also no more impaired by mask wearing than it was by sunglass wearing, with kids identifying emotions around 27 percent correctly in both cases.

Children's resilience, already supported by strong evidence in this study, is likely to be increased in real-world settings, where additional clues like vocal inflection and body language clue kids into what emotions to expect from others. The study suggest that kids are well able to adapt to mask-wearing without impediments to their growth and development.

Feeling down or bored? Watching a nature documentary can help!

COVID-19 is making travel impossible, but Netflix-based nature could help your mood

Rita Ponce

Evolutionary Biology

Polytechnic Institute of Setúbal

Taking a stroll in the park can make us feel good. But, what about watching a movie about it? Although there is evidence that contact with nature improves our wellbeing, unfortunately not everyone can access the outdoors. Could virtual nature experiences be a solution?

A team of researchers from the University of Exeter and the University of Surrey set out to test whether exposure to virtual nature could improve one’s mood and alleviate boredom. First, the participants (96 adult volunteers) performed a boredom-inducing task, watching a four minute video where a man talked in a monotone voice about his office work. Afterward, they were exposed to virtual nature by watching five minutes of a documentary about coral reefs on either a high-definition 2D television, a 360º virtual reality video on a headset, or an interactive computer-generated virtual reality experience similar to the video versions on a headset with hand-held controllers. The researchers assessed the participants' moods and feelings before and after their contacts with virtual nature.

All three types of virtual exposure to nature reduced negative feelings, had a positive effect in the mood and increased feelings of connectedness to nature. While all settings were equally good at reducing bad feelings, the interactive virtual reality inspired the greatest positive feelings. 

The researchers point out, their results can be a first step to prepare for further analysis in “real” boring settings, such as hospitals or care homes. And, as many of us are facing lockdowns, we may keep in mind that nature documentaries can be a good companion — fancy virtual reality headset not required.

New help for allergies could be on the way

Researchers have identified the cells that trigger uncomfortable allergic responses

Hazel Walker

Immunology and Cell Biology

University of Cambridge

Many of us are familiar with the itchiness that can accompany an allergic response, along with the urge to scratch when we know we shouldn’t. Scientists are now one step closer to understanding what triggers such allergic responses.

Dendritic cells (DCs) are white blood cells that patrol the body on the look-out for foreign antigens that might pose a threat. Upon detecting a potential threat — sometimes a harmless allergen — certain DCs in the skin can become activated and migrate to the lymph nodes where they interact with T cells in order to initiate an allergic immune response. 

DCs can detect potential invaders using receptors on their surface. However, in a paper recently published in Immunity, researchers from Massachusetts General Hospital and Harvard Medical School found that allergy-initiating DCs isolated from mice did not become activated in response to model allergens, suggesting there must be other factors required for their activation and subsequent migration in living systems.  

Suspecting that the culprit was sensory neurons in close proximity to these DCs in the skin, the researchers injected mice with a chemical that blocks the function of sensory neurons and found that it prevented an allergic response. Furthermore, they showed that certain sensory neurons release a neuropeptide called Substance P in response to allergens. And when Substance P was injected into mice, it caused DCs to move to their lymph nodes, leading to an allergic response. 

Not only does this finding highlight the importance of looking at immune responses both in isolation and within living organisms, the discovery of the role of sensory neurons and Substance P in allergic responses identifies a potential target for allergy medications.

A new tweak to an old model explains the existence of primordial black holes

Black holes formed in the early universe could be linked to dark matter

Briley Lewis

Astronomy and Astrophysics

University of California, Los Angeles

Dark matter makes up almost 30% of our universe, yet we still aren’t sure exactly what it is. One suggestion is that dark matter is made up of primordial black holes (PBHs), black holes formed in the very early universe. 

Usually, we think of black holes as forming from the deaths of the largest stars — but these PBHs had to be created before stars existed in the universe. A new model from researchers at UCLA shows a way that PBHs could have formed so that they explain all the dark matter observed in the universe.

This model builds on the Standard Model of particle physics, which describes how different particles and forces are related to each other, by adding only one additional term to its equations. In the early universe, particles coalesced together into massive halos, which could possibly collapse to make PBHs. The problem, though, is that in order for these halos to collapse, they’d need to get rid of some of their energy. This updated model describes a way for halos to radiate away that energy, meaning PBHs are, indeed, possible.

The model suggests that if PBHs are small, they could be abundant enough to explain all the mass of dark matter we see. If PBHs are large, they might not be able to explain all of dark matter, but they could still explain a fraction of it and even be detected by LIGO, the Laser Interferometer Gravitational Wave Observatory — meaning we could someday have concrete evidence for them.

Disclaimer: This research is by one of the author's colleagues.

An accidental experiment discovered new cells in cat brains and led to a Nobel Prize

Cats looking at dots inside a tent revealed the different eye cells that process movement and light

Julia A Licholai


Brown University

Projecting film onto the ceiling of an indoor tent is a fun summer evening activity. It was also a laboratory setup at Johns Hopkins in the 1960s. What’s more exciting is that this setup led to a body of work that netted the tent-pitchers a Nobel Prize. Their finding in the tent is taught in all introductory neurobiology textbooks - the existence of cells sensitive only to particularly oriented lines. And it was all an accidental discovery that took place under these covers

These experiments began with a cafeteria meeting in 1959, where David H. Hubel met Stephen Kuffler and Torsten Wiesel. After confirming their interests in studying visual information processing in a superficial layer of the brain (the cortex), Hubel and Weisel set up their tents in Kuffler’s laboratory. 

Their experiments involved cats looking at the ceiling of this small indoor “circus arena,” where dark or light dots were projected while monitoring the activity of a single neuron. Their goal was simple: to understand what visual pattern activated these neurons. They used dots, drawn on glass slides to make the projection equipment work, since they knew they reliably stimulated retinal cells in the cats' eyes. After weeks of experiments, with various mishaps including accidentally spraying themselves with formalin (similar to formaldehyde), they triggered an avalanche of neuronal activity. 

Next to the projected dots was a shadow line cast from the edge of the glass slide the dots were drawn on. This line, an accidental stimulus rising from imprecise slide placement, revealed the existence of orientation sensitive cells, or cells that respond only to lines in certain angles, also sometimes called “simple cells.” Soon, they also found “complex cells,” neurons that responded to lines moving in a particular direction or having directional selectivity. (Their use of “simple” and “complex” highlight the increase in information processing as information passes through the brain, as simple cells are thought to send information to complex cells.) 

Hubel and Wisel paved the path for studying how the brain processes information. Their names and their work are revered in neurobiology, but their laboratory adventures and beneficial mishaps are less often remembered. 

A trio of imaging techniques brings new insight into how neurons work

Researchers found evidence that refuted previous scientific beliefs

Laura McCormick

Cell Biology

University of North Carolina - Chapel Hill

Dating back to the drawings of Ramon y Cajal, neuroscientists have always been fascinated with the striking shapes of neurons. Today, scientists still rely heavily on microscopy—albeit with instruments far more advanced than those in 1900—in hopes of understanding how neurons work by visualizing these fantastic cells. As new imaging techniques and approaches develop, we are able to learn more and more about neurons and the brain as a whole.

The beautiful shape of a neuron is intrinsically linked to its function. If the branched dendrite of one neuron contacts the long slim axon of another neuron, a connection (synapse) may form between them. When a neuron is stimulated, little packets of neurotransmitters called vesicles are released at the synapse. Then, the neurotransmitters are taken up by the second neuron, affecting its own activity. 

This process occurs continuously in the billions of neurons and trillions of synapses that make up the human brain. With these astounding numbers, how can scientists zoom in and understand how specific neurons function, let alone specific synapses?

A new study published in Nature used a trio of impressive techniques to help answer this question. By optimizing a combination of light microscopy, electrophysiology, and electron microscopy, the researchers were able to measure the activity and image the ultra-structure of synapses in a mouse brain.

They observed numerous instances of axons and dendrites from different neurons touching, suggesting synapses were at these contact sites. However, when they took ultra-structure images of these neurons by electron microscopy, they noted synapses only formed at a percentage of the contact sites.  

In examining the synapses that did form, the researchers made two novel observations. First, they showed that the size of synapse correlated with the electrical activity of the neuron. They also determined numerous vesicles could be released at the synapse simultaneously, contradicting the previous belief that only one vesicle was released at a time.

This combination of various methodologies to study the same synapse opens the door for future work to further probe the relationship between neuronal structure and activity, ultimately helping the scientific community better understand how synapses form and are regulated.

Defective ribosomes leave proteins to build up in our cells

New research on fruit flies illustrates what happens when ribosomes go awry

Joyce Yu

Cell Biology and Developmental Biology

The Francis Crick Institute

Proteins are the fundamental components of virtually everything occurring within our bodies – but what happens when the machines that make proteins become defective? 

These protein-making machines are called ribosomes and mutations in ribosomes are connected to a group of human disorders called ribosomopathies. However, it remains unclear, at a cellular level, why defects in ribosomes cause problems in our bodies. This is where the use of model organisms such as fruit flies for research purposes is particularly valuable.

In a recent study, scientists used the fruit fly as a model to study the cellular basis of ribosomapathy. The scientists introduced a mutation previously reported from a human patient into the fruit fly ribosome. The resulting flies were developmentally delayed, and had much shorter hairs than normal.

In looking at the fruit fly cells, the researchers found that proteins that were not produced properly built up and formed aggregates. Proteins have to be folded into the correct 3D structure to perform their functions; and cells have an in-built system to remove any misfolded protein. But when ribosomes cannot operate normally due to a mutation, defective ribosomal products build up and can place an unusually large burden on the cell’s protein degradation system – a phenomenon called proteotoxic stress.

This finding opens up promising avenues for future therapeutics. The scientists proposed that this proteotoxic stress can be relieved by boosting the removal of toxic waste from cells (a process called autophagy), as well as combining with treatments that enhance protein production quality. Similar interventions have already been considered for diseases that involve protein aggregates, such as Alzheimer’s disease and Huntington’s disease.

Disclaimer: This paper was performed in the author's current lab group, but they were not involved in the research.

Science and philosophy can, and should, coexist

MC Hammer's recent tweet has sparked a conversation about the complementary nature of these two fields

 MC Hammer recently brought the hammer down on those who see science and philosophy as fundamentally opposed disciplines.  He first tweeted a link to this paper, showing that STEM fields account for 21.3% of citations of philosophy of science journals.  Some tweeters responded with unflattering, and inaccurate, characterizations of philosophy that put it at odds with science.  In response, MC Hammer had some words of advice praised by scientists and philosophers alike: "It's not science vs Philosophy ... It's Science + Philosophy. Elevate your Thinking and Consciousness. When you measure include the measurer."

MC Hammer's insistence on the complementary nature of science and philosophy is in line with this 2019 opinion paper, published in PNAS.  The authors described a continuum of science and philosophy, as the two fields share "the tools of logic, conceptual analysis, and rigorous argumentation.”  They also provided three concrete examples of how philosophy helped scientific research in the life sciences and concluded with six practical proposals to encourage collaboration between scientists and philosophers.  

Tweets by MC Hammer promoting these views will hopefully also help to break down harmful stereotypes of the disciplines that might prevent scientists and philosophers from working together for the good of society.

Researchers develop a new tool to quantify self-care during COVID-19

We've all probably heard the term self care. What does it really mean?

Emma Okumura

Life Sciences

McGill University

Self-care is a term that has gained immense momentum in the past year, in an era where most people have been stripped of their previous coping mechanisms and left to explore new ways to handle stress. Hearing this mantra may conjure up images of a face mask treatment, yoga sessions, or movie marathon, but in reality it is much more complex.

Although self-care boasts a history of blurry definitions in the past, the term actually grew out of the nursing field and a model called Orem’s Self Care Model. It encompasses both the intent and knowledge to care for one’s health, as well as the activities performed to accomplish this goal. A current model called the Seven Pillars of Self-Care framework categorizes self-care activities such as physical activity, healthy eating, and good hygiene.

Yet, self-care remains difficult to quantify. Pre-existing studies and frameworks have failed to provide an effective way to screen self-care activities, both in and outside of COVID-19 times. Developing this screening would help identify who is most likely to do self-care, and the activities they engage it. It is of utmost importance in an era where mental health issues and lack of holistic health care are as widespread as the virus itself.   

In their pursuit to test existing screenings to develop an improved self-care screening method, a research team in Spain has developed a survey called the Self-care Activities Screening Scale (SASS-14) to measure self-care activities among Spanish-speaking populations during COVID-19. Because their survey is specific to the pandemic, they were able to recommend that screening for self-care during periods of extended lockdown should focus on physical care, nutrition, sleep, and emotional health.

As a result of this research, the SASS-14 is available as an online tool for healthcare workers to use to monitor how people are taking care of themselves during the extended lockdowns and lack of social contact that we are all experiencing.

The Perseverance rover sends back the first photos and sounds from Mars

The rover's landing was captured in an incredible video

Briley Lewis

Astronomy and Astrophysics

University of California, Los Angeles

Last week, NASA’s Perseverance rover safely landed on Mars. In the days since, the science team has been checking the rover’s systems to make sure it is working and ready to explore, and they’ve also received Perseverance’s first images of the Martian surface. Even cooler, they recently released the first sounds (ever!) from Mars and the first video of a spacecraft landing on the red planet.

Unlike earlier Mars missions (Sojourner, Spirit and Opportunity), which landed on giant airbags, Perseverance and its predecessor Curiosity landed using a “sky crane” system, where a rocket-powered crane gently lowers the rover down to the surface. The Mars Reconnaissance Orbiter (MRO) also captured a bird’s eye view of the landing, plus where all the various descent stages (heat shield, parachute/back shell, and sky crane) ended up across the surface.

Perseverance and its landing gear were uniquely equipped with a microphone and six cameras to capture the various angles of the entry, descent, and landing process. In the incredible video of Perseverance’s landing, you can see the parachute launched by a small explosive, the first step in slowing down the spacecraft. This parachute had a hidden easter egg from the engineering team, too—its color pattern reveals the JPL motto, “Dare Mighty Things.” After the parachute deployed, the spacecraft gently rocked back and forth until the back shell separated and the sky crane's engines kicked in, steering the rover toward its landing spot. 

The rover approached the surface, obscured by dust kicked up from the sky crane’s rockets. Once it touched down, the last frames of the video reveal the sky crane cutting the wires attaching it to the rover, then flying away to land elsewhere on Mars, safely away from the rover. Post-landing, Perseverance’s microphone captured the sound of a gusty wind accompanied by the constant buzz of the rover itself.

So, what comes next for Perseverance? The mission team will continue checking out the hardware to make sure all systems are working properly, and will soon take the rover for its first drive on the Martian surface. It landed near a variety of different geologic features scientists are eager to explore, including an ancient river delta already spotted in Mastcam-Z’s incredible panorama. (Note: The “Z” is for zoom, so we can certainly expect more stunning photos.) There’s so much exciting science to come as Perseverance explores Mars looking for signs of life!

Having trouble sleeping? Look to the moon for answers

New research shows that our circadian rhythms are guided by the moon as well as the sun

Anna Wernick


University College London

Humans are diurnal – we are active during the day and sleep at night. Our circadian rhythms are in sync with the sun, the strongest source of light on the planet. However, recent evidence suggests that moonlight may also influence our sleeping patterns, and this effect changes with the lunar cycle.

"We hypothesize that the patterns we observed are an innate adaptation that allowed our ancestors to take advantage of this natural source of evening light that occurred at a specific time during the lunar cycle," said Leandro Casiraghi, lead author of a new study, published in Science Advances.

The research, a collaboration between the University of Washington, Yale University, and the National University of Quilmes in Argentina, assessed the activity patterns of 562 participants across an urban-rural gradient. Participants included members of three Indigenous Toba/Qom communities in Argentina and undergraduate students from the University of Washington. Each participant slept with a wristwatch that tracked their movement and sleep. This data was combined with NASA's sun and moon data for each location.

The researchers found that the time the participants went to sleep and how long they slept oscillated during the course of the lunar cycle. On nights leading up to a full moon, when the moon was brighter, people went to sleep later and slept for a shorter time. 

The researchers concluded that moonlight stimulates nocturnal activity, especially for those in rural communities where light pollution is sparse. People in cities, with greater light pollution, went to sleep later and slept for less time in general, but still followed similar patterns to people living with little or no access to artificial light. The researchers state that the artificial light present in cities mimics the effect that moonlight has on sleep for rural communities. 

So next time you are having trouble falling asleep, you may want to look to the moon for an explanation.

Female scorpions pay a steep cost when they shed their tails for survival

Many species shed limbs and tails to escape sticky situations

Prayan Pokharel


University of Hohenheim

There are many organisms such as spiders, lizards, and even starfishes (and many more) who voluntarily shed or detach a body part, also known as autotomy. They do so for several reasons. For example, autotomy is an escape strategy (for instance, if a leg is trapped between two rocks). It can also be a distraction for predators — an amputated tail wriggles, and makes a predator look one way while the tail shedder runs the other. Sometimes organisms self-amputate wounded limbs. 

In a nutshell, autotomy enhances survival. However, it may also impose some costs.

Recently, scientists tested if this survival strategy incurs any reproductive costs in a scorpion species, Ananteris balzani. The scorpion sheds its tail permanently, causing the loss of the anus and a lifelong inability to poop. Male scorpions also use their tails during mating. 

However, the researchers showed that tail loss has no effect on male mating success when compared to males with a tail. Remarkably, a tail-less female had less of babies than females with tails. This interesting finding suggests that the negative effect of “taillessness” is sex-dependent, and in these scorpions it is the females that pay the cost.

Texas weather has a disproportionate financial impact on marginalized families

Electricity companies can charge some consumers more for the same electricity

The US residential power supply system is messed up at all times, but Texas's power supply is particularly problematic right now. And worse, it's about to be crushing financially for millions of families impacted by winter weather, especially the families that are poor, or elderly, or not white (or all three).

Because many states have deregulated their power markets, a lot of people get their power through retail energy suppliers. These companies are, essentially, energy arbitrage firms. They spend a lot of time and money analyzing weather and usage and production to decide how much power to buy for their customers, and how much to charge for that power. They usually make sure that their costs are significantly below the rate they offer customers — that's how they make money. Except for when something unexpected happens, like an extreme weather event. 

Right now, for a lot of reasons, energy providers don't have access to a lot of power to purchase, and the massive winter demand coupled with huge supply problems are causing the wholesale price of power to skyrocket from $50 per megawatt-hour to over $9,000 per megawatt-hour

But these retail energy suppliers still need to make money, so how do they make up this ginormous deficit? They charge people more for the power! They might be able to legally add a surcharge to your bill in some areas, or they might adjust rates next year. The easiest thing to do, though, is just charge people more - and the consumers they can charge more are the consumers with variable-rate plans (VRP).

There can be a lot of good reasons to choose a variable rate plan, but there are also a lot of bad reasons to choose (or be assigned) a VRP. Sometimes a VRP is all that's available to a consumer (they have bad credit, they can't afford to put a deposit down for a contract with a fixed rate), or it's assigned to a consumer. Much like credit card companies, if you miss a payment, energy suppliers can put you in the metaphorical penalty box by charging you interest on your overdue balance while also raising your rates - penalty plans are often variable rate plans. 

Sometimes people end up with a VRP because of an information asymmetry — for example, when an elderly person signs up for a bad plan because it was incorrectly recommended or the first option offered, or when someone with limited English proficiency or literacy deficits doesn't understand their options.

After the 2014 polar vortex, households on VRPs experienced astronomical bills. In some areas, the cost of electricity jumped to $2 per kWh. For context, the average cost of residential electricity was $0.125 per kWh in 2014. In Chicago, one 72-year-old man reported that his monthly bill jumped from $81 to over $300. 

That's why marginalized people are likely to be extra financially burdened by this storm. They are more likely than average to be on VRPs.

This winter weather is bad news for everyone - people are dying, people don't have power in frigid conditions. This weather crisis has the potential to be financially disastrous for families, on top of the costs of repairs from weather damage. Help these families by donating to charities that assist with paying heating and electric bills, demanding accountability from lawmakers and energy regulators, and taking steps to stop climate change so these storms don't get worse every year. 

If you have power right now, you can help these households by trying not to use your power. Rationing is effective against blackouts, but it also helps drive down demand, and thus cost. 

Coral larvae swim more slowly in dim light

Their search for the right light intensity and color could set them up for success later in life

Raj Rajeshwar Malinda

Cell Biology and Developmental Biology

Natural light is thought to be one of essential environmental factors dictating the ways animals live their lives. In aquatic animals, like coral larvae, the intensity and color of the light can be a crucial factor associated with swimming and moving behavior.

A new research study by a team of Japanese researchers, published in Scientific Reports, has explained how Acropora tenuis (a common reef coral) larvae move through the deep sea in response to the light intensity and color. 

Coral larvae are the free-moving life stage of corals, and they build colonies of the things that we think of as reef corals. The researchers found that these coral larvae swim slower in deeper water where there is less light, and that blue light is a particularly important cue for swimming. This is remarkable, since larvae lack eyes, yet they can still sense light intensity and color. The researchers suggest that this behavior could help the larvae locate habitat with the bright and blue wavelengths of light they need as adults. 

This behavioral phenomenon in coral larvae provides a more fundamental understanding of the early phases of larval settlement coral reefs in the natural environment.

The range of microbes in your sourdough starter affect its smell and rise

Getting bored of pandemic-baking? Maybe you need different microbes!

Adam Fortais


McMaster University

In what is perhaps the most "2020" study, a group of researchers from the United States and Denmark (with the help of community scientist-bakers across the globe) have studied the biodiversity contained within 500 sourdough starters. Their research was recently published in the journal eLife

The researchers collected 500 sourdough starters. These came mainly from the United States and Europe, but also included contributions from New Zealand, Thailand, and Australia. 

All 500 sourdough samples were DNA-sequenced to determine their microbial makeup. They then took 40 samples that represented the range of diversity and tested them for aroma profiling, chemical analysis, and rising speed. They discovered that an until-now overlooked component of microbial diversity, acetic acid bacteria, play a significant role in sourdough's aroma and rising speed.

As an observational study, the results do not give us a master recipe for exactly which microbes create which bread characteristics. But the study does show that the types of microbes in a sourdough started affects how it rises, smells, and bakes. If you are still pandemic-baking, rest assured that there is plenty more fun to be had in determining the exact role of the microbes found in sourdough.

The long-standing myth of sea monsters has a dark explanation

Mythical sea serpents were probably marine animals tangled in fishing gear

Ashley Marranzino

Marine Biology

University of Rhode Island

Stories of sea serpents and other ocean-dwelling monsters are long-standing myths. Now, in research published in the journal Fish and Fisheries, one scientist has uncovered the culprit behind historical sea serpent sightings in the British Isles.

After parsing through over 200 reports of sea-serpent sightings made between 1809-2000, Robert France from Dalhousie University concluded that accounts of a “many-humped” monster lurking near the water's surface in the British Isles were actually early sightings of marine animals entangled in fishing gear. 

France scoured sightings published in historical newspapers, scientific journals, natural history books, cryptozoology texts, and even legally sworn testimonials. While sightings varied substantially, there were some common threads: The sea-serpent body stretched for tens of meters in length (up to 100m), formed many coils or humps at the surface, and frequently had hair or whiskers. Many reports suggested the serpents were capable of moving rapidly or reported them thrashing at the surface of the water. 

But France argues these descriptions conflict with all known  (living and extinct) marine animals and can be more easily explained when considering the possibility of a marine animal pulling lines of rope and buoys behind them. 

Today, the synthetic materials that impart strength and durability to fishing gear weave a tight cocoon around unfortunate animals tangled within their grasp. But before the advent of these materials, fishing gear was made of natural products that would have allowed for animals to move more freely while attached to fishing gear. Instead of succumbing to more instantaneous deaths we associate with entanglements today, animals may have simply carried their entrapment devices around with them until the natural materials eventually degraded. 

Beyond solving an age-old mystery that has enchanted sea-goers, France points to a more insidious narrative: marine entanglements have long been a pervasive problem, plaguing the oceans far longer than scientists expected.   

New study finds COVID-19 mortality is associated with right ventricle irregularities

Human hearts are divided into two main parts, and the right one has long been neglected by researchers

Michael Nguyen-Truong


Colorado State University

Human hearts are divided into two major parts: the right and left ventricles. In the history of research on heart function and failure, the left ventricle has received the majority of the attention while the right ventricle has been severely neglected, despite its reported functional abnormalities in an estimated 70 million people in the United States. 

The right and left ventricles of our hearts work together as a pump for our bodies, but the right ventricle is different from the left ventricle in its anatomy and physiology. For example, the left ventricle wall is more muscular than the right ventricle wall, and the left ventricle can be described as a conical or bullet shape while the right ventricle is shaped like a crescent. These differences indicate that the understanding and treatment of conditions affecting the right ventricle require specific and distinct research on it. 

However, a recent study of 510 hospitalized COVID-19 adult patients published in the Journal of the American College of Cardiology found that irregularities in the shape and structure of the right ventricle could predict COVID-19 mortality. 

Right ventricle enlargement, called dilation, and dysfunction, observed from clinical transthoracic echocardiography (a non-invasive imaging technique using ultrasound), were reported from 35% and 15% of patients studied, respectively. Both dilation and dysfunction were associated with increased mortality risk. Taken together, the study suggests that right ventricle remodeling is a possible predictor of COVID-19 hospitalization and death.

#BlackInAstro founder Ashley Walker is fighting for equality in the space sciences

Just three percent of undergraduate physics degrees are awarded to Black students. Walker aims to change that (and a lot more!)

Briley Lewis

Astronomy and Astrophysics

University of California, Los Angeles

Last year’s Black Lives Matter protests spurred a reckoning with the United States’ unjust history and ongoing systemic racism, and science is not exempt from this revolution. 

According to the American Physical Society, only three percent of undergraduate physics degrees (and two percent of physics PhDs) are awarded to Black students in the U.S. 

The American Institute of Physics records show that 2.1 percent of all physics faculty are Black, and there are only 22 Black women with astronomy PhDs according to AAWiP (African American Women in Physics).

Inspired by these facts, everything happening in the U.S., and other movements like #BlackBirdersWeek and #BlackInIvory, Ashley Walker, an astrochemist from Chicago, started the #BlackInAstro movement last summer. Walker is the first ever astrochemist to earn a Bachelor's degree from Chicago State University and an intern at the NASA Goddard Space Flight Center. They’ve been highlighting the achievements of Black astronomers and space scientists and sharing their experiences of what it’s like to be Black in the field of astronomy.

Now headed into another year of #BlackInAstro, and the start of Black History Month, I checked in with Ashley Walker to hear her thoughts on how far the movement has come, and where it’s going next. Looking back on the growth of #BlackInAstro, she’s proud of “the Black space community coming together, as well as the tremendous amount of support that came with it. I will always be surprised that it was trending on Twitter.” 

Although they’ve done so much in building this community of Black astronomers and educating allies, #BlackInAstro is nowhere near done. Walker is determined to “continue celebrating ourselves, the past, and the future, as well as seeing what effective change is coming out of #BlackInAstro in addition to so many years of people before us fighting for equality in space sciences. We wanted to have our seat at the table, so I created a table for ALL of us.”

Disclaimer: The author of this piece is a member of the Astrobites collaboration, which has previously worked with Ashley Walker on #BlackInAstro.

A NASA spacecraft flew by a Saturnian moon, uncovering a chemical mystery

Where did the hydrazine detected on Rhea come from?

Olivia Harper Wilkins



One of the most exciting things about space chemistry is that it gives us a glimpse of chemistry that is difficult to study — or might not even exist — on Earth. A well known example of this is the chemistry on Saturn's largest moon Titan, which is famous for its lakes of methane. Scientists think that this Saturnian satellite has a hydrocarbon cycle that is much like our water cycle on Earth. 

A recent article published in Science Advances shined a light on the chemistry of one of Saturn's lesser known moons: Rhea

Using data from NASA's Cassini mission, researchers found a mysterious chemical signature in ultraviolet imaging data collected during a flyby of Rhea. They concluded that the most likely contender for this chemical feature is hydrazine, a nitrogen-containing compound typically used in manufacturing on Earth. In fact, hydrazine is one of the compounds used as a propellant for the Cassini spacecraft! 

After confirming that Cassini's thrusters were shut off during the flyby of Rhea, the researchers had to consider other possible sources for the hydrazine. On Earth, small amounts of hydrazine are produced naturally by some algae and tobacco plants, but any hydrazine on Rhea wouldn't come from anthropogenic or biological sources. It is also possible that hydrazine could form within the ice on the surface of Rhea, but the moon's thin atmosphere leaves molecules on its surface vulnerable to irradiation that breaks apart the molecules needed to form hydrazine. 

The hydrazine could also come from Titan. Scientists don't yet know whether hydrazine could even form on Titan, but the moon's nitrogen-rich atmosphere makes it a promising factory for hydrazine and other similar molecules. 

Unfortunately, Saturn and its moons are too far away to further investigate this chemistry any time soon. We might have to wait until NASA's planned Dragonfly mission takes us back Titan again so we can better understand the chemistry there, and perhaps on Rhea too.

Intestinal roundworm cells eat their own DNA as part of a healthy lifecycle

During their development, DNA off the ends of their chromosomes are chopped off and destroyed

Sree Rama Chaitanya

Molecular Biology

The Centre for DNA Fingerprinting and Diagnostics

The thought of losing DNA for survival sounds bizarre, but many life forms do this at different stages of their life. For example, the parasitic worm Ascaris, also called the roundworm, loses about 13-90% of its germ cell DNA during their change to somatic cells,  which are all of the other cells in the body.

Scientists now looked closer into what kind of DNA sequences are lost and where they go, using sequencing- and imaging-based techniques. 

They found that all 24 chromosomes of Ascaris germ cells harbor DNA breaks close to the chromosome ends or telomeric regions. Although most of the DNA in and around the telomeres is lost, new telomeric DNA is attached back to somatic cells. 

When they imaged the worm cells, they found broken DNA is densely packed inside of the nucleus by lipid membranes. This packed DNA was evicted out into the cytoplasm, where it was attacked by proteins deployed by the cells to eat waste cellular material (a process called autophagy). 

At this moment, it is still not clear why Ascaris cells put in all this extra work to get rid of DNA. One prediction scientists propose is that Ascaris could get rid of DNA only necessary for germ cell function but not useful to somatic cells.  

Physicists take another step towards room temperature superconductivity

The new superconducting material contains carbon, hydrogen, and sulfur

Thomas Mittiga


UC Berkeley

In 1968, physicist Neil Ashcroft predicted that pure hydrogen would condense under extreme pressure into a superconducting metal capable of surviving at room temperature. Not many believed him, but the possibility of room temperature superconductivity inspired a few intrepid researchers. 

Attitudes changed in 2015 when physicist Mikhail Eremets discovered a compound of hydrogen and sulfur that was superconductive up to -70 oC (-94 oF) when extreme pressure was applied. The work inspired a wave of research on room-temperature superconductivity with hydrogen compounds.

In a recent study published in Nature, a group of physicists reported superconductivity at room temperature and extreme pressure by adding a third element — carbon — to Eremet’s original compound of hydrogen and sulfur. They chose to use carbon because its strong bonds could help keep a material together once the pressure is released as it does for diamond. 

The researchers compressed their mix of elements between the microscopic tips of two pointy diamonds. The final result was a superconducting temperature of 15 oC (58 oF) at 267 gigapascals, the same pressure that you would experience if you traveled about three-fourths of the way to the center of the Earth. 

While they knew the chemical elements that made up the superconductor, the extreme pressure prevented their probes from obtaining data on the material’s final molecular and crystal structure. Until these are determined, researchers will face difficulty developing models that explain the high superconducting temperature measured.

Since the new superconductor requires extreme pressure, it also currently lacks immediate practical applications. Yet, the study suggests that a variation could prove useful, sparking new enthusiasm among researchers. The fantasies of ultra-efficient energy generation, perfect energy storage, and lossless power transmission are much closer to reality.

New imaging technique follows antibiotics directly into tuberculosis-infected cells

Tuberculosis requires a 6-12 month treatment course, and now scientists know why

Anna Wernick


University College London

Before the advent of antibiotics, an infected paper cut could be deadly. Now we can use antibiotics to treat bacterial meningitis, strep throat and even tuberculosis. However, unlike most antibiotic prescriptions, tuberculosis treatment requires a regime of three different antibiotics and takes between six months and a year. This type of prolonged exposure to antibiotics drives the development of antibiotic resistance.

Scientists do not completely understand why such an extended course is needed to treat tuberculosis. They do know, however, that antibiotics must enter all of the bacterially-infected cells in order to be effective. Therefore, if scientists could develop antibiotics that enter the host cells as efficiently as the bacteria does, this could shorten the course of treatment required - reducing the risk of antibiotic resistance developing.

Researchers at the Francis Crick Institute in the UK and the University of Western Australia tackled this problem by developing an imaging technique to see which infected lung cells the antibiotics could enter. The team infected mice with Mycobacterium tuberculosis and treated them with the antibiotic bedaquiline. They used a new microscopy method, called CLEIMiT (correlative light, electron, and ion microscopy in tissue), to identify the specific cells that the antibiotic was taken up by.

An anti-tuberculosis poster, with a baby wearing a bib saying "Don't kiss me!"

A WPA poster, circa 1936-1941, warning against tuberculosis 

Via Library of Congress

They found that bedaquiline was unable to enter all of the infected lung cells, meaning while some bacteria were being killed, others managed to evade the treatment. This could explain why such a long treatment regime for tuberculosis is required. CLEIMiT offers the possibility of characterizing current antibiotics that we use to assess their cell-specific uptake, as well as aiding the development of more efficient antibiotics. This will ultimately reduce the risk of the development of antibiotic resistance.

A new genetic testing method makes assisted reproduction safer

However, it does not alleviate the serious ethical concerns around genome editing of embryos

In 2018 two babies, Lulu and Nana, were born as the result of a procedure called heritable human genome editing (HHGE) done by Dr. He Jiankui from the Southern University of Science and Technology in China. The procedure was against Chinese regulations and raised serious ethical questions. Dr. Jiankui is now in prison.  

As a result of their genomes being edited, Lulu and Nana could face serious health conditions. Lulu and Nana’s DNA was modified long before they were born, when they shared one single cell, so they are at risk of mosaicism. Mosaicism occurs when an organism has different genetic information in different cells, as opposed to having the same genetic information in every single cell.  

Genetic abnormalities in an early embryo can be detected before being implanted in the mother through genetic testing, using biological samples from the outer layer of the embryo. These tests do not reflect the genetic information of the whole embryo, and the occurrence of undetected mosaicism could affect the results. 

Recently a group of scientists showed the efficiency of a new, non-invasive preimplantation genetic testing. Researchers used a sample from the inner cavity of an early embryo instead of the outer layer. As a result, this test was more reliable for detecting mosaicism in the embryo. The development of this non-invasive genetic testing could help to detect genetic abnormalities in embryos in assisted reproduction procedures and to detect mosaicism in HHGE experiments.

However, just because this procedure can detect mosaicism does not mean that HHGE is safe or a good idea. Undesired and unwanted potentially dangerous changes performed with genome editing can be passed down to future generations, and significant, legitimate ethical concerns remain. Currently, the scientific community recommends not to perform genome editing intended for pregnancy, and to regulate such experiments.

Phage therapy is effective against the superbug Acinetobacter baumannii

Viral predators can help battle an antibiotic-resistant bacterium considered an "urgent threat" by the CDC

Ashley Knox

Microbiology and Virology

University of Colorado

Antibiotic resistant bacteria are a growing threat, causing deadly infections that cannot be cured by our standard antibiotics. The development of antibiotic resistant bacteria may be further fueled by strained resources, increased hospitalizations, and decreased surveillance during the SARS-CoV-2 pandemic

With limited development of new drugs to treat resistant bacterial infections, new therapies are desperately needed to prevent the spread of these “superbugs”. To this end, researchers are looking to a natural predator of bacteria – bacteriophages. Bacteriophages or “phages” are viruses that specifically infect bacterial cells. Depending on the type of phage, this infection can ultimately kill the bacteria that usually resist antibiotic treatment. Though commercial therapies are not yet available, the use of phage therapy is a hot topic boasting thousands of studies and several famous success stories.

While phage therapy shows great promise in the fight against resistant bacteria, these superbugs are constantly adapting and can evolve quickly to even resist phage infections. Fortunately for us, this resistance often comes with a cost. Researchers at Monash University have found a way to leverage the trade-off made by a phage resistant bacteria to make it once again susceptible to antibiotics. 

Antibiotic-resistant Acinetobacter baumannii (A. baumannii) is considered an “urgent threat” by the Centers for Disease Control and Prevention. Like many disease-causing bacteria, A. baumannii forms a sugary outer capsule that can protect the bacterial cell from antibiotics and make it deadlier. However, the researchers behind this new study discovered that A. baumannii's protective layer also serves as the entry point for phage. 

When the team exposed different strains of A. baumannii to phages in the lab, the bacteria quickly developed phage resistance by shedding their outer capsule to lock out the viral invaders. While capsule-less bacteria were protected from phage infection, researchers found that the mutated strains of A. baumannii were also re-sensitized to several antibiotics. Through experiments where they infected mice with A. baumannii, they also discovered that decreased bacterial reproduction in a host is another trade-off for phage resistance. They concluded that phage therapy can be effective in treating this superbug infection. 

The CDC notes that infections from A. baumannii most often occur in healthcare settings, and people at highest risk are those who are on breathing machines (ventilators), in intensive care units, or have prolonged hospital stays. With these situations currently all too common in hospitals full of COVID-19 patients, phage therapy may provide an option where other treatments fail.

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