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Most of your favorite flowers are mutants

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Genetic mutations in flowers and animals express themselves differently.

Most of your favorite flowers are mutants

You'll never look at a rose the same way again.

If you’ve ever purchased a rose from a store, you’ve bought a mutant. Throughout history, people have encountered, admired, and been mystified by mutant flowers. The Greek philosopher Theophrastus described double flowers in roses over 2000 years ago. Since then, double flowers like roses, peonies, geraniums, marigolds and garnations have become sought after and valued as garden plants.

A double-flowered bloom. Photo by StacyK, from Flickr and Wikimedia Commons.

We now know that all of these flowers (and many more) are genetic mutants. The extra petals we covet are actually mutated sex organs. It's taken us thousands of years to go from Theophrastus' observations to a scientific understanding of how these flowers became so beautiful.

In the late 18th century, the German writer and poet Goethe recognized that mutants could be used to study how flowers developed. Goethe had developed an interest in botany while serving in the court of Weimar, and later while observing different types of flora in Italy in the late 1780s. He came to believe that there was a single unifying body part of every plant, the leaf, which he laid out in his seminal 1790 paper, “The Metamorphosis of Plants."

Open up any flower and you can see where Goethe got this idea. Most flowers contain four concentric, nested circles of organs, which we call whorls. You can identify what organ you are looking at based on its position within this blueprint. From outer whorl to inner whorl the organs are: sepals (usually green and leaflike), petals (typically showy and attractive), stamens (the male reproductive organs and pollen producers), and finally carpels (the female reproductive organs). The carpels contain eggs, and after fertilization grow into fruits that surround seeds. 

The parts of a flower. Laura Aškelovičiūtė

Based on his observations of double roses, Goethe proposed that the various parts of flowers were all equivalent, which explained why organs were so easily converted into one another. Biologists had mixed reactions to Goethe’s theory. While some hailed him as the father of morphology, others believed he was trying to artificially bend nature to conform to his views

It took almost 200 years to experimentally verify his theories about floral organ development at genetic level. But scientists didn't use roses to do it. They turned to a common roadside weed.

In 1873, Alexander Braun described a “double-flower” mutant in the common plant Arabidopsis, also known as thale cress. By the 1980s, scientists realized that the plant was perfect for genetic study thanks to its small genome, short generation time, knack for mutating easily, and ability to take up and express foreign DNA. 

Arabidopsis mutant with "double flower" phenotype. Photo by Daniel Ocampo from Flickr and Wikimedia Commons.

Thanks to work done with Arabidopsis thaliana and Antirrhinum majus in the 1980s, we finally got an answer to the question Goethe had begun asking centuries before: why do flowers look like they do? We now know that four classes of genes overlap to form the four different floral organs. Organ transformations happen because each organ identity in a flower is specified by the presence of particular combinations of proteins. Change the combinations, change the organs created.

Research on Arabidopsis thaliana in a seminal paper published in 1991 deepened our understanding of how normal and abnormal flowers develop. The well known ABC model emerged out of this paper, marking the beginning of a field of study linking genetics and development in flowers.

When researchers tested different versions of mutations in the four genes, they found a spectacular array of physical changes in the organs of the flower. In one mutation, sepals developed as either carpels or leaves and petals developed as stamens. Two versions of mutations in one gene caused petals to develop as sepals, and stamens to develop as carpels. Another two mutations in a third gene caused stamens to develop as petals, and an entirely new flower to develop in place of carpels. 

Based on the data collected from their single mutant lines, the authors proposed a model where sepals were formed by A class genes only, petals by an overlap of A and B genes, stamens by B and C genes, and carpels by C alone. 

Flower organs and the gene classes that define them, adapted from (Bowman, 1991). In the double and triple mutant examples, the presence of extra organs represents growth of an additional flower out from the center. Claire Meaders

Using this model, they then predicted what they would see if they made plants with mutations in multiple classes of genes. They crossed plants with different mutations together, generating what are called “double” or “triple” mutant lines. Those mutant lines confirmed that the genes function across whorls. Without B and C genes, only A genes are expressed and all of a flower's whorls develop as sepals. Without A and C genes there are no floral identity genes in the outer whorl, so there are only leaves, no petals. Having only B genes leads to development of hybrid petal/stamens in the second and third whorls The absence of C genes leads to the initiation of another flower in the forth whorl in place of the carpel. Based on their results, the authors concluded that these genes are essential for organ identity in flowers. 

Over time, different flower lineages have made tweaks and adjustments to the body plan. But the ABC model still fits the 300,000 species of flowering plants that exist today, even ones that have made radical departures from the basic plan. 

The plant that I study, the columbine (Aquilegia), has five whorls instead of four. It evolved an additional whorl with a different type of organ, the staminodium, in between the stamens and carpels. 

Scanning electron microscopy image of a dissected flower bud. Sepals, petals, and all but three stamens have been removed. The organs shown are a whorl of staminodia surrounding the whorl of carpels in Aquilegia. SEM image by Claire Meaders

In Aquilegia, duplications in the B class genes allowed for multiple copies of a B gene to divvy up the work, evolving a new function. Traditionally, B genes are expressed in petals and stamen whorls. In Aquilegia, one copy of the B genes is expressed primarily in the petals, one copy is stamen specific, and one copy was left to create a whole new whorl, the staminodium. 

Scanning electron microscopy image of a whorl of staminodia in Aquilegia. SEM image by Claire Meaders

From ancient philosophers to 18th-century poets to today, we've come a long way in understanding how flowers develop. It’s been especially fascinating to me to learn how mutations in this one universal body plan, which was itself inherited from cones, lead to the incredible diversity in floral form that we see today. Yet we still have much to learn. I suspect the next 30 years of plant biology research will reveal entirely new connections between the beauty we so admire and the genetic code that lies beneath.

Featured Paper

  • Bowman, J.L., Smyth, D.R., & Meyerowitz, E.M. (1991). Genetic interactions among floral homeotic genes of Arabidopsis. Development, 112 (1991), pp. 1-20.


  • Bowman, JL., Smyth, DR., Meyerowitz, EM. 1989. Genes Directing Flower Development in Arabidopsis. The Plant Cell. 1(1), 37-52. http:/ / dx. doi. org/ 10. 1105/ tpc. 1. 1. 37
  • Bowman, JL., Smyth, DR., Meyerowitz, EM. 2012. The ABC model of flower development: then and now. Development. 139, 4095-4098 doi:10.1242/dev.083972
  • Coen, E., Meyerowitz EM. 1991. The war of the whorls: genetic interactions controlling flower development. Nature. 353, 31-37. doi:10.1038/353031a0
  • Coen, E. 1999. The Art of Genes: How Organisms Make Themselves. Oxford University press. 61. 
  • Coen, E. 2001. Goethe and the ABC model of flower development. C R Acad Sci III.324(6), 523-530.
  • Goethe, JWV. Translated by Arber, A. 1946. Goethe's Botany: The Metamorphosis of Plants (1790). Chronica botanica.
  • Dornelas, MC., Dornelas O. 2005. From leaf to flower: revisiting Goethe’s concepts on the “metamorphosis of plants”. Brazilian Journal of Plant Physiology. 17(4). 
  • Litt, A., Kramer E. 2010. The ABC model and the diversification of floral organ identity. Seminars in Cell & Developmental Biology. 21(1), 129-137.
  • Melzer, R., Wang YQ., Theißen, G. 2010. The naked and the dead: The ABCs of gymnosperm reproduction and the origin of the angiosperm flower. Seminars in Cell & Developmental Biology. 21(1), 118-128.
  • Meyerowitz, EM. 2001. Prehistory and History of Arabidopsis Research. Plant Physiology. 125(1), 15-19. http:/ / dx. doi. org/ 10. 1104/ pp. 125. 1. 15
  • Sharma, B., Kramer, E. 2012. Sub- and neo-functionalization of APETALA3 paralogs have contributed to the evolution of novel floral organ identity in Aquilegia (columbine, Ranunculaceae). 197(3), 949-957.
  • Theißen, G., Becker, A. 2004. Gymnosperm Orthologues of Class B Floral Homeotic Genes and Their Impact on Understanding Flower Origin. Critical Review in Plant Sciences. 23 (2), 129-148.
  • Theophrastus. Enquiry into Plants, Volume II: Books 6-9. On Odours. Weather Signs. Translated by Arthur F. Hort. Loeb Classical Library 79. 1916. Cambridge, MA: Harvard University Press, 1916.